MarpolBase
Genome Database for Marchantia polymorpha
- Gene Fetcher Get gene sequences
- Genome Slicer Extract genomic regions
- Gene ID converter Convert gene IDs between genomes
- Liftover Convert coordinates between genomes
Marchantia Gene Info
Genome Browser
MBEX: Marchantia Expression Database
Gene Nomenclature
[Important notice] To maintain nomenclature consistent and systematic, we strongly recommend that gene names/symbols should be registered before publications and presentations.
Analytical Tools
BLAST similarity search Mp Reference Genome v7.1 (latest)
BLAST similarity search MpTak_v6.1 and earlier
BLAST similarity search JGI 3.1 and plant species (legacy website)
GMAP cDNA mapping/alignment to the Marchantia genome
CasFinder sgRNA designing for the CRISPR/Cas9 system
amiRNA Design Helper target site search for amiRNA gene knockdown
GGGenome Ultrafast genome sequence search (for JGI 3.1)
CRISPRdirect Fast target search for the CRISPR/Cas9 system (for JGI 3.1)
CRISPR-P sgRNA design for CRISPR/Cas9 genome editing in plants (for JGI 3.1)
Utility tools
Marchantia Literature Archives
Download Marchantia Genome Resources
MarpolBase paper describing the database features as well as the ver. 7.1 reference genomes is now available on bioRxiv.
Please cite our paper when using genome data from MarpolBase.
High-quality reference genomes for Tak-1 (MpTak1_v7.1) and Tak-2 (MpTak2_v7.1) and new standard reference genome (MpTak_v7.1) have become available.
Find them at
README
/
Download
Marchantia Pangenome Resources have become available. Please read this for more details.
The new revision of the standard reference genome MpTak_v6.1r2 ( male Tak1 genome + female Tak2 U-chr) has been released. Some of the gene models have been updated and some of the unplaced scaffolds have been removed.
Now MpTak_v6.1r2 is designated as the default genome in MarpolBase.
See README for what has been changed. The genome data is downloadable from here